Technical Support https://informatics-analytics.dfci.harvard.edu/ en PathML tools for computational pathology https://informatics-analytics.dfci.harvard.edu/pathml-tools-computational-pathology <span class="field field--name-title field--type-string field--label-hidden">PathML tools for computational pathology</span> <div class="field field--name-field-institutions field--type-entity-reference field--label-hidden field__items"> <div class="field__item"><a href="/taxonomy/term/2" hreflang="en">DF/HCC</a></div> <div class="field__item"><a href="/taxonomy/term/1" hreflang="en">DFCI</a></div> <div class="field__item"><a href="/taxonomy/term/3" hreflang="en">Outside participating sites</a></div> </div> <span class="field field--name-uid field--type-entity-reference field--label-hidden"><span lang="" about="/user/155" typeof="schema:Person" property="schema:name" datatype="">biodata</span></span> <span class="field field--name-created field--type-created field--label-hidden">Sat, 06/01/2024 - 19:32</span> <div class="clearfix text-formatted field field--name-body field--type-text-with-summary field--label-hidden field__item"><p><strong>PathML objective is to lower the barrier to entry to digital pathology.</strong></p> <p>Examples:</p> <ol dir="auto"> <li><a href="https://github.com/Dana-Farber-AIOS/pathml/blob/master/examples/loading_images_vignette.ipynb">Load over 160+ different types of pathology images using PathML</a></li> <li><a href="https://github.com/Dana-Farber-AIOS/pathml/blob/master/examples/stain_normalization.ipynb">H&amp;E Stain Deconvolution and Color Normalization</a></li> <li><a href="https://github.com/Dana-Farber-AIOS/pathml/blob/master/examples/workflow_HE_vignette.ipynb">Brightfield imaging pipeline: load an image, preprocess it on a local cluster, and get it read for machine learning analyses in PyTorch</a></li> <li><a href="https://github.com/Dana-Farber-AIOS/pathml/blob/master/examples/multiplex_if.ipynb">Multiparametric Imaging: Quickstart &amp; single-cell quantification</a></li> <li><a href="https://github.com/Dana-Farber-AIOS/pathml/blob/master/examples/codex.ipynb">Multiparametric Imaging: CODEX &amp; nuclei quantization</a></li> <li><a href="https://github.com/Dana-Farber-AIOS/pathml/blob/master/examples/train_hovernet.ipynb">Train HoVer-Net model to perform nucleus detection and classification, using data from PanNuke dataset</a></li> <li><a href="https://github.com/Dana-Farber-AIOS/pathml/blob/master/examples/pathml_gallery.ipynb">Gallery of PathML preprocessing and transformations</a></li> </ol> <p>More information at: <a href="https://github.com/Dana-Farber-AIOS/pathml" rel=" noopener" target="_blank">https://github.com/Dana-Farber-AIOS/pathml</a></p> <p>in a hurry? &nbsp;&nbsp;<em>docker pull pathml/pathml &amp;&amp; docker run -it -p 8888:8888 pathml/pathml</em></p> </div> <div class="field field--name-field-users field--type-entity-reference field--label-hidden field__items"> <div class="field__item"><a href="/taxonomy/term/30" hreflang="en">Analytics users</a></div> <div class="field__item"><a href="/taxonomy/term/20" hreflang="en">Basic researchers</a></div> <div class="field__item"><a href="/taxonomy/term/11" hreflang="en">Clinical researchers</a></div> </div> <div class="field field--name-field-access-and-support-url-or- field--type-link field--label-hidden field__item"><a href="https://www.pathml.org">PathML website</a></div> <div class="field field--name-field-fast-find-service-link field--type-entity-reference field--label-hidden field__item"><a href="/taxonomy/term/8" hreflang="en">Technical Support</a></div> Sat, 01 Jun 2024 23:32:50 +0000 biodata 202 at https://informatics-analytics.dfci.harvard.edu GPT4DFCI https://informatics-analytics.dfci.harvard.edu/gpt4dfci <span class="field field--name-title field--type-string field--label-hidden">GPT4DFCI</span> <div class="field field--name-field-institutions field--type-entity-reference field--label-hidden field__items"> <div class="field__item"><a href="/taxonomy/term/1" hreflang="en">DFCI</a></div> </div> <span class="field field--name-uid field--type-entity-reference field--label-hidden"><span lang="" about="/user/155" typeof="schema:Person" property="schema:name" datatype="">biodata</span></span> <span class="field field--name-created field--type-created field--label-hidden">Wed, 03/27/2024 - 19:49</span> <div class="clearfix text-formatted field field--name-body field--type-text-with-summary field--label-hidden field__item"><p>GPT4DFCI, a private, secure, HIPAA-compliant generative AI tool based on GPT and o1 models, is now available to Dana-Farber&nbsp;workforce members to try out for work purposes, excluding clinical care.</p> <p><strong>To request access:</strong></p> <ol> <li>If working remotely, be sure you're connected to VPN.</li> <li>Visit the&nbsp;<a href="https://dfciservicerequest.dfci.harvard.edu/?RelayState=GPT4DFCI" rel=" noopener" target="_blank">Informatics &amp; Analytics GPT4DFCI sign-up page</a>.</li> <li>Log in with your MGB username and password.</li> <li>Complete and submit the ticket.</li> <li>Once your access is granted, visit <a href="https://gpt4dfci.dfci.harvard.edu" rel=" noopener" target="_blank">https://gpt4dfci.dfci.harvard.edu</a>&nbsp;</li> </ol> <p>Please review Dana-Farber’s&nbsp;<a href="https://dfcipolicies.ellucid.com/documents/view/9473" rel=" noopener" target="_blank"><strong>new policy on acceptable use of generative AI</strong></a>. Workforce members are required to use generative AI systems in a manner that maintains the protection of protected health information (PHI), personally identifiable information (PII), and other confidential information. It also must be used in a manner that maintains the integrity required for scientific analysis as well as generation of scientific content such as text, images, graphics, and figures.</p> <p><em>Please remember,&nbsp;publicly available AI tools can pose significant privacy and security risks. For this reason, only Dana-Farber-approved AI tools can be used for work purposes.</em></p> <p>Do you want to discuss an idea for a custom GPT? Would you like API access? <a href="https://informatics-analytics.dfci.harvard.edu/groups/artificial-intelligence-operations-data-science-services">Get in touch</a>.</p> <p><strong>More information: </strong><a href="https://www.dana-farber.org/newsroom/news-releases/2024/private-and-secure-generative-ai-tool-supports-operations-and-research-at-dana-farber">GPT4DFCI Press Release</a>.</p> </div> <div class="field field--name-field-users field--type-entity-reference field--label-hidden field__items"> <div class="field__item"><a href="/taxonomy/term/30" hreflang="en">Analytics users</a></div> <div class="field__item"><a href="/taxonomy/term/20" hreflang="en">Basic researchers</a></div> <div class="field__item"><a href="/taxonomy/term/17" hreflang="en">Belfer Office for Dana-Farber Innovations (BODFI)</a></div> <div class="field__item"><a href="/taxonomy/term/14" hreflang="en">Budget office</a></div> <div class="field__item"><a href="/taxonomy/term/11" hreflang="en">Clinical researchers</a></div> <div class="field__item"><a href="/taxonomy/term/13" hreflang="en">Clinical trial administration</a></div> <div class="field__item"><a href="/taxonomy/term/18" hreflang="en">Office of General Council</a></div> <div class="field__item"><a href="/taxonomy/term/15" hreflang="en">Pharmacy</a></div> <div class="field__item"><a href="/taxonomy/term/16" hreflang="en">Research administrators</a></div> <div class="field__item"><a href="/taxonomy/term/12" hreflang="en">Research staff</a></div> </div> <div class="field field--name-field-fast-find-service-link field--type-entity-reference field--label-hidden field__item"><a href="/taxonomy/term/8" hreflang="en">Technical Support</a></div> Wed, 27 Mar 2024 23:49:12 +0000 biodata 200 at https://informatics-analytics.dfci.harvard.edu Monitors and accessories https://informatics-analytics.dfci.harvard.edu/monitors-and-accessories <span class="field field--name-title field--type-string field--label-hidden">Monitors and accessories</span> <span class="field field--name-uid field--type-entity-reference field--label-hidden"><span lang="" about="/user/7" typeof="schema:Person" property="schema:name" datatype="">KRT9</span></span> <span class="field field--name-created field--type-created field--label-hidden">Thu, 07/08/2021 - 16:46</span> <div class="clearfix text-formatted field field--name-field-brief-description field--type-text field--label-hidden field__item">Ordering monitors and accessories for Dynamic Work</div> <div class="clearfix text-formatted field field--name-body field--type-text-with-summary field--label-hidden field__item"><p>Equipment can be purchased through Peoplesoft by navigating to eMarketplace, then Supplier Websites. Two suppliers are&nbsp;"The Ergonomic Group" as well as "PC Connections Sales Corp"<br /> If you do not have access to Peoplesoft for ordering, you can reach out to the DFCI contacts listed <a href="https://dfcionline.org/departments/purchasing/services/computerdiscount/" rel=" noopener" target="_blank">here</a>.&nbsp;</p> </div> <div class="field field--name-field-access-and-support-url-or- field--type-link field--label-hidden field__item"><a href="https://peoplesoft.dfci.harvard.edu/psp/fnprod/?cmd=login">PeopleSoft</a></div> <div class="field field--name-field-fast-find-service-link field--type-entity-reference field--label-hidden field__item"><a href="/taxonomy/term/8" hreflang="en">Technical Support</a></div> Thu, 08 Jul 2021 20:46:41 +0000 KRT9 147 at https://informatics-analytics.dfci.harvard.edu Network Access Control (NAC) https://informatics-analytics.dfci.harvard.edu/network-access-control-nac <span class="field field--name-title field--type-string field--label-hidden">Network Access Control (NAC)</span> <div class="field field--name-field-institutions field--type-entity-reference field--label-hidden field__items"> <div class="field__item"><a href="/taxonomy/term/1" hreflang="en">DFCI</a></div> </div> <span class="field field--name-uid field--type-entity-reference field--label-hidden"><span lang="" about="/user/7" typeof="schema:Person" property="schema:name" datatype="">KRT9</span></span> <span class="field field--name-created field--type-created field--label-hidden">Fri, 11/13/2020 - 13:22</span> <div class="clearfix text-formatted field field--name-field-brief-description field--type-text field--label-hidden field__item">A component of the overall effort to strengthen the security of our environment</div> <div class="clearfix text-formatted field field--name-body field--type-text-with-summary field--label-hidden field__item"><p>NAC checks devices connecting to the Mass General Brigham network for compliance with specific security policies. The agent currently used at Mass General Brigham is ForeScout <a href="https://informatics-analytics.dfci.harvard.edu/services/technical-support/#secureconnector" target="_blank">SecureConnector</a>, which is already installed on most Mass General Brigham standard Windows workstations, some PEAS-enrolled Macs and mobile devices. Linux computers are exempt at this time.<br /> Please see the DFCI Online <a href="https://dfcionline.org/departments/informationservices/infosec/nac/" target="_blank">NAC page</a> for more information</p> </div> <div class="field field--name-field-users field--type-entity-reference field--label-hidden field__items"> <div class="field__item"><a href="/taxonomy/term/20" hreflang="en">Basic researchers</a></div> <div class="field__item"><a href="/taxonomy/term/11" hreflang="en">Clinical researchers</a></div> <div class="field__item"><a href="/taxonomy/term/16" hreflang="en">Research administrators</a></div> <div class="field__item"><a href="/taxonomy/term/12" hreflang="en">Research staff</a></div> </div> <div class="field field--name-field-access-and-support-url-or- field--type-link field--label-hidden field__item"><a href="https://dfcionline.org/departments/informationservices/infosec/nac/">DFCI Online NAC page</a></div> Fri, 13 Nov 2020 18:22:27 +0000 KRT9 127 at https://informatics-analytics.dfci.harvard.edu Email web access https://informatics-analytics.dfci.harvard.edu/email-web-access <span class="field field--name-title field--type-string field--label-hidden">Email web access</span> <span class="field field--name-uid field--type-entity-reference field--label-hidden"><span lang="" about="/user/7" typeof="schema:Person" property="schema:name" datatype="">KRT9</span></span> <span class="field field--name-created field--type-created field--label-hidden">Thu, 07/02/2020 - 10:22</span> <div class="clearfix text-formatted field field--name-field-brief-description field--type-text field--label-hidden field__item">Outlook on the web</div> <div class="clearfix text-formatted field field--name-body field--type-text-with-summary field--label-hidden field__item"><p>You can check your email anytime via <a href="https://outlook.office.com/" target="_blank">Outlook on the web</a>. At the first screen, use your email address and at the second screen where it says Access Office 365, enter your Partners username and email password.&nbsp;<br /> &nbsp;</p> </div> <div class="field field--name-field-access-and-support-url-or- field--type-link field--label-hidden field__item"><a href="https://outlook.office.com/">Access Outlook on the web</a></div> Thu, 02 Jul 2020 14:22:25 +0000 KRT9 122 at https://informatics-analytics.dfci.harvard.edu IS Service Hub https://informatics-analytics.dfci.harvard.edu/service-hub <span class="field field--name-title field--type-string field--label-hidden">IS Service Hub</span> <span class="field field--name-uid field--type-entity-reference field--label-hidden"><span lang="" about="/user/7" typeof="schema:Person" property="schema:name" datatype="">KRT9</span></span> <span class="field field--name-created field--type-created field--label-hidden">Tue, 06/23/2020 - 14:22</span> <div class="clearfix text-formatted field field--name-field-brief-description field--type-text field--label-hidden field__item">Submit a web ticket to the IS Service Desk </div> <div class="clearfix text-formatted field field--name-body field--type-text-with-summary field--label-hidden field__item"><p>For urgent issues, please do not submit a web ticket. Call the IS Service Hub at 617-632-3399 for these issues and indicate the priority.&nbsp;<br /> Non-urgent issues can be submitted via a <a href="https://partnershealthcare.service-now.com/isservicehub/ " target="_blank">web ticket</a>. Find detailed instructions&nbsp;<a href="https://informatics-analytics.dfci.harvard.edu/services/support-instructions" target="_blank">here</a>.</p> </div> <div class="field field--name-field-access-and-support-url-or- field--type-link field--label-hidden field__item"><a href="https://partnershealthcare.service-now.com/isservicehub/">Open a ticket</a></div> Tue, 23 Jun 2020 18:22:34 +0000 KRT9 121 at https://informatics-analytics.dfci.harvard.edu Lab Websites https://informatics-analytics.dfci.harvard.edu/lab-websites <span class="field field--name-title field--type-string field--label-hidden">Lab Websites</span> <div class="field field--name-field-institutions field--type-entity-reference field--label-hidden field__items"> <div class="field__item"><a href="/taxonomy/term/1" hreflang="en">DFCI</a></div> </div> <span class="field field--name-uid field--type-entity-reference field--label-hidden"><span lang="" about="/user/7" typeof="schema:Person" property="schema:name" datatype="">KRT9</span></span> <span class="field field--name-created field--type-created field--label-hidden">Thu, 06/04/2020 - 09:14</span> <div class="clearfix text-formatted field field--name-field-brief-description field--type-text field--label-hidden field__item">Develop and maintain lab websites</div> <div class="clearfix text-formatted field field--name-body field--type-text-with-summary field--label-hidden field__item"><p>DFCI's Communications Department offers a&nbsp;Lab Website Program (LWP) at no cost, utilizing DFCI branded templates&nbsp;designed for non-technical professionals to learn and use.<br /> Contact to get started:&nbsp;<a href="mailto:luise_dittrich@dfci.harvard.edu">Luise Dittrich</a>&nbsp;-&nbsp;Project Manager, LWP.</p> </div> <div class="field field--name-field-users field--type-entity-reference field--label-hidden field__items"> <div class="field__item"><a href="/taxonomy/term/20" hreflang="en">Basic researchers</a></div> <div class="field__item"><a href="/taxonomy/term/12" hreflang="en">Research staff</a></div> </div> <div class="field field--name-field-fast-find-service-link field--type-entity-reference field--label-hidden field__item"><a href="/taxonomy/term/8" hreflang="en">Technical Support</a></div> Thu, 04 Jun 2020 13:14:41 +0000 KRT9 119 at https://informatics-analytics.dfci.harvard.edu NIH STRIDES Initiative GCP Account https://informatics-analytics.dfci.harvard.edu/nih-strides-initiative-gcp-account <span class="field field--name-title field--type-string field--label-hidden">NIH STRIDES Initiative GCP Account</span> <div class="field field--name-field-institutions field--type-entity-reference field--label-hidden field__items"> <div class="field__item"><a href="/taxonomy/term/1" hreflang="en">DFCI</a></div> </div> <span class="field field--name-uid field--type-entity-reference field--label-hidden"><span lang="" about="/user/7" typeof="schema:Person" property="schema:name" datatype="">KRT9</span></span> <span class="field field--name-created field--type-created field--label-hidden">Wed, 03/18/2020 - 16:14</span> <div class="clearfix text-formatted field field--name-body field--type-text-with-summary field--label-hidden field__item"><p><strong>Researcher Application form</strong>:&nbsp;<a href="/sites/default/files/IA/GettingStartedwithSTRIDES.docx" title="GettingStartedwithSTRIDES">GettingStartedwithSTRIDES.docx</a><br /> The application form must be filled out and sent to <a href="mailto:coyne@onixnet.com">Jim Coyne</a> at Onix in addition to submitting a request on the&nbsp;<a href="https://informatics-analytics.dfci.harvard.edu/groups/computational-solutions/research-computing-infrastructure-request-form">Research Computing Infrastructure request form</a></p> <p>As of Monday April 20, 2020 DFCI will be participating in the NIH STRIDES Initiative. &nbsp;Joining the initiative will give researchers with NIH funded grants, access to discounts for services offered by Google Cloud Platform (GCP).&nbsp;</p> <p>The NIH STRIDES initiative promotes the use of <u>cloud technologies in research</u>. &nbsp; Currently the NIH has negotiated with Google and Amazon to provide discounts to those researchers that would like to use these technologies. &nbsp;The NIH &nbsp;promises that in the near future, data sharing by funded institutions as well the NIH itself will be available.&nbsp;<br /> From the <a href="https://www.nih.gov/news-events/news-releases/nih-makes-strides-accelerate-discoveries-cloud" target="_blank">NIH Website</a> “STRIDES Initiative”<br /> “…NIH to explore the use of cloud environments to streamline NIH data use by partnering with commercial providers. NIH’s STRIDES Initiative provides cost-effective access to industry-leading partners to help advance biomedical research. These partnerships enable access to rich datasets and advanced computational infrastructure, tools, and services.”<br /> <br /> Additional reference documents:&nbsp;<a href="/sites/default/files/IA/Google%20Cloud%20for%20Strides.pdf" title="Google Cloud for Strides">GoogleCloudforStrides</a>&nbsp;,&nbsp;<a href="/sites/default/files/IA/STRIDES%20-%20GCP%20Professional%20Services%20One-Pager.pdf" title="StridesGCP">STRIDESGCPProfessionalServices</a></p> </div> <div class="field field--name-field-users field--type-entity-reference field--label-hidden field__items"> <div class="field__item"><a href="/taxonomy/term/20" hreflang="en">Basic researchers</a></div> <div class="field__item"><a href="/taxonomy/term/11" hreflang="en">Clinical researchers</a></div> <div class="field__item"><a href="/taxonomy/term/12" hreflang="en">Research staff</a></div> </div> <div class="field field--name-field-access-and-support-common- field--type-entity-reference field--label-hidden field__item"><a href="/taxonomy/term/29" hreflang="en">Research Computing Infrastructure request form</a></div> <div class="field field--name-field-fast-find-service-link field--type-entity-reference field--label-hidden field__item"><a href="/taxonomy/term/8" hreflang="en">Technical Support</a></div> Wed, 18 Mar 2020 20:14:53 +0000 KRT9 114 at https://informatics-analytics.dfci.harvard.edu Encrypted USB flash drive https://informatics-analytics.dfci.harvard.edu/encrypted-usb-flash-drive <span class="field field--name-title field--type-string field--label-hidden">Encrypted USB flash drive</span> <span class="field field--name-uid field--type-entity-reference field--label-hidden"><span lang="" about="/user/7" typeof="schema:Person" property="schema:name" datatype="">KRT9</span></span> <span class="field field--name-created field--type-created field--label-hidden">Mon, 11/18/2019 - 10:30</span> <div class="clearfix text-formatted field field--name-field-brief-description field--type-text field--label-hidden field__item">DFCI approved encrypted flash drive</div> <div class="clearfix text-formatted field field--name-body field--type-text-with-summary field--label-hidden field__item"><p>Dana-Farber encryption policy requires anyone using a flash drive (thumb drive) to use a hardware encrypted flash drive.<br /> <a href="https://www.connection.com/product/kingston-32gb-datatraveler-vault-privacy-3.0-flash-drive-blue/dtvp30-32gb/16399263" target="_blank">Kingston 32GB DataTraveler Vault Privacy 3.0 Flash Drive</a>&nbsp;is one of the approved encrypted USB flash drives&nbsp;available from PC Connection.&nbsp;<br /> Contact <a href="mailto:elizabeth.gosselin@connection.com">Beth Gosselin</a> to order.&nbsp;</p> </div> <div class="field field--name-field-users field--type-entity-reference field--label-hidden field__items"> <div class="field__item"><a href="/taxonomy/term/20" hreflang="en">Basic researchers</a></div> </div> Mon, 18 Nov 2019 15:30:35 +0000 KRT9 103 at https://informatics-analytics.dfci.harvard.edu User profile lookup https://informatics-analytics.dfci.harvard.edu/user-profile-lookup <span class="field field--name-title field--type-string field--label-hidden">User profile lookup</span> <span class="field field--name-uid field--type-entity-reference field--label-hidden"><span lang="" about="/user/7" typeof="schema:Person" property="schema:name" datatype="">KRT9</span></span> <span class="field field--name-created field--type-created field--label-hidden">Fri, 11/15/2019 - 14:20</span> <div class="clearfix text-formatted field field--name-field-brief-description field--type-text field--label-hidden field__item">Tool to view profile information</div> <div class="clearfix text-formatted field field--name-body field--type-text-with-summary field--label-hidden field__item"><p>This web page displays your profile information. For example, which Partners drives are available for you to access.<br /> Log in with your Partners username and password.</p> </div> <div class="field field--name-field-access-and-support-url-or- field--type-link field--label-hidden field__item"><a href="http://helpdeskqueries.partners.org/userinfo/defblock.asp">Partners user info</a></div> Fri, 15 Nov 2019 19:20:25 +0000 KRT9 102 at https://informatics-analytics.dfci.harvard.edu